rs48203195 SNP Detail

Summary

• ID
  rs48203195
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65812972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACACACAGT CAGTTGGCAG
  GGGTGAGGGA GACCTTCTCC AACAGGAAAT TAGCAGCGCG GATGAGGGAG ACATTCTCTT
  TCTCCTGGCT GTGCTGCTAA ACTCTGGAAA AAAAAAAAAA AAAAAAAAAC CCTGGTCCAT
  TTTCCTTCCG TTGTTAAGGA AGTCATCAAT GCTGCCAAGA GTTTCCAAAT CAACACTCTT
  M
  CAGGCAGCAC TTATTAAACT CTCACTGGGG CCTCTCAAAC CTCTGTTTCT AGCTTCATGA
  TCCAGACAGC ATTTGATTGT TTGTTCATTT CACATTTGAG ATTGGGATAG ATAGTCTACT
  GCAGTTTCTT TCTTTCTGCT GGAAGAGAAT GTAACAAACA GGAAGTTAAA GTTCTTGTGG
  GGTGAGGCTC AGACAAAAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ
ss60417594	NES15922384	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ
rs48203195					SNP	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60417594	NES15922384	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65812972 () rs orientation: forward

Symbol	Name	Function Class
Gm65138	predicted gene, 65138	within coordinates
Rr577752	regulatory region 577752	446 bp distal
Rr577753	regulatory region 577753	within coordinates
Rr577754	regulatory region 577754	162 bp proximal