rs48202638 SNP Detail

Summary

• ID
  rs48202638
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145122007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGCCGCC GGCTGTAGTG
  TCTCTTCCTG CTCTGCCATG TTATAGTTGT TCTAGGATGT GGCAGCTTTC TTGTGTCTGT
  CTTATGTGCA CCCTGTTTTA TTAATCTTTT GTCATTAACA AAAAAGCAAT GAACACAAAT
  ATGATTTCTC TGTATCTTAG TTTCAAATCC AAAAACCAAT TCAAGTTAGC AGGCAGGTAG
  K
  GCTGCCACGG GTCACTGATT GTTTTTTGTT TGTTTGTTTG TTTGTTTGTT TCTTCTTTTG
  TACTGGTTGC GAACATAATG AATTTATTTG ATTTTTATAT GTGGGCCACA TGTAAACAAA
  GGATGCAACC AGAAATTATC ATTTTCCCTC TAGCAAACAC TTGAGATTAT TACCAGGAAA
  CATTTCTAAG AACAATGAAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss136038389	ENSMUSSNP3362186	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321008281	CHEV_3_145079216	CHEVERUD	SCREENING_POP	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs48202638					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145122007 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530034A14Rik	RIKEN cDNA 9530034A14 gene			within coordinates
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
Rr586779	regulatory region 586779			1662 bp proximal
Rr586780	regulatory region 586780			1782 bp proximal