rs48199680 SNP Detail

Summary

• ID
  rs48199680
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130908912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAATGTCCTC TTCTGGTGTG TCTGAAGACA GTGACAGTGT
  ACCTACATAC ATGAAATAAA TAAATAAATA TCTGAGAGAG ACAGACAGAC AGACACTGGC
  Y
  AGTCATCTCA CAATGTTCTC ATGTTTAAAA TATGATACCA TTTGTATAAA GCAGAAACAC
  AGGAAAAATA AAATCTGTGG TATTATATTT GATTTTTAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147598327	ENSMUSSNP1870561	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48199680					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130908912 () rs orientation: forward

Symbol	Name	Function Class
Rr565176	regulatory region 565176	628 bp proximal
Tssr20240	transcription start site region 20240	1720 bp upstream
Tssr26336	transcription start site region 26336	294 bp downstream
Tssr26337	transcription start site region 26337	1133 bp downstream
Tssr26338	transcription start site region 26338	1463 bp downstream
Tssr26339	transcription start site region 26339	1537 bp downstream
Tssr26340	transcription start site region 26340	1619 bp downstream
Tssr26341	transcription start site region 26341	1884 bp downstream
Tssr26342	transcription start site region 26342	1905 bp downstream
Tssr26343	transcription start site region 26343	1959 bp downstream