rs48197617 SNP Detail

Summary

• ID
  rs48197617
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:25644537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAGGAAG GGTGTTTATG
  TGACAAGGCC ATGAGTACTG TTCTGAGACC TTGTTCCCTC CAGTTGTGCA AACAAGAGCG
  TTACTGGGCG TTACTGACCT CAGGGTTCTA AGCTGGAAAC CTTTGGCCCT GAATGGTCTG
  GATTAGGTTT TCCTAAGATG TCACCTCTCA GTAAAGGGTG CCTTAGCCTG ACAAGCCCAG
  Y
  TGTCTTCCCA GACATGCTAT TCTTGTTTCC TCTTCTTTTC TCTCTCCTCA CCTCCTTCCT
  AACAGAGGGC CCCCCTCTGC CGGACCTAGG CCAGGCCATC CTGGGGGGGA GCTGTCATGC
  TTCCCTGGGT CTTCATCCAC AGACAACATC TGGGCCAAAG ACACAGAGGT GTCTTTTTTA
  GAGCAGCAGC CCAGGGCGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62159260	NES17182781	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48197617					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62159260	NES17182781	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:25644537 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr489197	regulatory region 489197			1975 bp proximal
Tssr124633	transcription start site region 124633			1560 bp downstream
Tssr124634	transcription start site region 124634			602 bp upstream
Zmiz1	zinc finger, MIZ-type containing 1			Intron
				Noncoding-Transcript-Variant