rs48197592 SNP Detail

Summary

• ID
  rs48197592
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146128096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTAAAGT TTGCACAGGT
  GAGAGGAGGG CCCTCCTCCT CCTTCCCGGC CTGGGAATGG CCTGTCTTCT CTCCAGTGTA
  TATTTTTTAG ATCATGGTTA AATACGAGGT GACTGCAGCT GTGCGGTCTC TCTCTCTCCT
  CGGCCATATT CCAAGGCCTC CATACCTGTT GTCATGGCAC TACCCTGCTG TCTTTGTCAC
  Y
  GTGGCTGCAT TATGTGACCT GAGATGCACA TAACCTGTGA CAGCTCGCTG TGCTGCTGTA
  TTCAAGCTTT AGCTCTTTGG AGCCTCTGTA TGTCTATATG AATTTTAGGT TTTTTGTAAT
  TTCTCAGAGT TTAGACTTGA ACTTGGGTAG TGTGAAGGAT AGTGTTCCCA GCTTCCTCTT
  CACATTTAGA GGCATTTATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136044156	ENSMUSSNP5118064	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss321010291	CHEV_3_146085305	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48197592					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146128096 () rs orientation: forward

Symbol	Name	Function Class
Rr587026	regulatory region 587026	1552 bp proximal
Ssx2ip	SSX family member 2 interacting protein	Intron