rs48196644 SNP Detail

Summary

• ID
  rs48196644
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122034823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGCACCAC AGGGAGTAGA TGCTTGGAAA TGTACAAGAA
  GTCAGATAAG GTAACTGTCC CATGGTCAGT GCATTTCCAG CAATAGATGC CTGAGCCCAT
  R
  GACCAGGTGT GATGCACCGG CGGAGGTGGC CAGGATGGGT CAAACCCAAG AGAAACCCAG
  ATACTAGCTG TTAACATCAC AACCAGGCAG CAGCAGCGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135737670	ENSMUSSNP6543781	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48196644					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122034823 () rs orientation: forward

Symbol	Name	Function Class
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	1930 bp upstream
Rr375675	regulatory region 375675	1586 bp upstream
Rr584261	regulatory region 584261	1568 bp proximal
Rr584262	regulatory region 584262	1941 bp proximal
Tssr31477	transcription start site region 31477	1929 bp upstream
Tssr35442	transcription start site region 35442	1371 bp upstream