rs48194994 SNP Detail

Summary

• ID
  rs48194994
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:78691216 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T ACATGATCTG GGTATACCTG GGAGGCAGGC TGGGGCTGAA
  AGTGATTTAG ACGCCGAGAG AGATTAATGG AGACCAAGAC ACGTTTTCTG TTCAAGGCCC
  R
  CGAGTTTACT AAGAGACCAT GCTTATAAGG GGGAAGGCCC ATCCCCCATG CCAGTCCACT
  CTTGGTGCCT GGAGCCATTC TGTCACCAGG CTGTTTGCTA T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss148607012	ENSMUSSNP5782212	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48194994					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:78691216 () rs orientation: forward

Symbol	Name	Function Class
Rr594151	regulatory region 594151	673 bp proximal
Tssr37651	transcription start site region 37651	711 bp upstream
Tssr37652	transcription start site region 37652	835 bp upstream
Tssr37653	transcription start site region 37653	1062 bp upstream