rs48194587 SNP Detail

Summary

• ID
  rs48194587
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172340567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAA CCTAGCCCAG CCAAACTAAC
  K
  GAACAACTGA AATCTAAACT CTAGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120011684	PARCsnp_1.19920	PARC_SEQ	INBRED	f	SNP			T	G
ss120014600	PARCsnp_1.09969	PARC_SEQ	INBRED	f	SNP			T	G
ss146194029	ENSMUSSNP3624444	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss320125798	CHEV_1_174443131	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs48194587					SNP	G	G	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172340567 () rs orientation: forward

Symbol	Name	Function Class
Gm37125	predicted gene, 37125	249 bp upstream
Gm57108	predicted gene, 57108	273 bp downstream
Gm70635	predicted gene, 70635	73 bp upstream
Rr396590	regulatory region 396590	within coordinates
Rr396591	regulatory region 396591	1034 bp upstream
Rr423599	regulatory region 423599	1958 bp distal
Rr423600	regulatory region 423600	1600 bp distal
Rr423601	regulatory region 423601	within coordinates
Rr423602	regulatory region 423602	14 bp proximal
Rr423603	regulatory region 423603	203 bp proximal
Rr423604	regulatory region 423604	1004 bp proximal
Rr423605	regulatory region 423605	1139 bp proximal
Rr423606	regulatory region 423606	1908 bp proximal
Tssr302	transcription start site region 302	999 bp downstream
Tssr10235	transcription start site region 10235	245 bp upstream
Tssr10236	transcription start site region 10236	1121 bp upstream
Tssr15228	transcription start site region 15228	933 bp downstream