rs48191008 SNP Detail

Summary

• ID
  rs48191008
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102379842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAAAAGG GGAAAGAAAG
  CGCTTGGAGG TAGAGCAGTG TTGAGAGGGG AGTGCAGGTG GGTTTACTCT ATCCTCCCAT
  CGCCTGTTGG GGGAGGGCAT ACTCGGCCTT ATATGGAGGT GGGTGGCAAT TTTTAGGAGT
  ATCTCCTTCT ATGGATTTCA GGAAATAAAC TCTGGTCCTA GTGCTTGAAC AGTAAACAGC
  Y
  CTGTCATTCT GTTGGGCCCC AGGCCACTCT TCTAATCTGT CTCTGTCTGC CTAATTTAGG
  TGACCACAAC CAATACCTGC CCCAGCCCCC CATTCCAGCC TTCCATGCCA CCTTTCTCAG
  CCTCTTCCAT AAGCCTCTCA TCTCAGGTTC TAGTACCATC CTGCCCTCTC AGCCTCCCAT
  CCCAGTGCCA TGCTAGCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147115258	ENSMUSSNP2655217	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320438739	CHEV_2_102389654	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48191008					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102379842 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11977	CpG island 11977	269 bp proximal
Pamr1	peptidase domain containing associated with muscle regeneration 1	515 bp upstream
Rr561703	regulatory region 561703	134 bp proximal
Rr561704	regulatory region 561704	1406 bp proximal
Tssr19094	transcription start site region 19094	548 bp upstream
Tssr19095	transcription start site region 19095	602 bp upstream
Tssr19096	transcription start site region 19096	620 bp upstream
Tssr19097	transcription start site region 19097	641 bp upstream