rs48189834 SNP Detail

Summary

• ID
  rs48189834
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127624351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAGTGTCC TCCATTCATC
  TGAGGTTTAA GAAGAGCCAC TGCAGTTTTT AATATCTCCT ATTACTTAAC CTAGTTTCTT
  ATATTTCCAT TGCTATCACT AAGGGAATTA AAAAAAATTT GTACACATTA TATTTGCTAC
  AGGCACATAG GGTTATAATG AAGTTCTCGT ACTAATACCC AACATTTCAC ATTAATAAGT
  W
  GGAAAAAAGC ACTTTGGCAG TACTTAGAAA GTGGAGCAAT GACAATCCCT TATTGGTAGT
  ATAAACTGGC AGAAACTTGG AAAACTTTAA TATACTGTAG CACTGATGAA GATATGCATA
  AGCTATCAGC CGGTGATTCC GTCCCTGGTC CTCTCCTGTA CAGGTGCAGA GGGGCTATTA
  TCAGAATGCC TATTAGCGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135872324	ENSMUSSNP6542188	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320957262	CHEV_3_127533620	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48189834					SNP	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127624351 () rs orientation: forward

Symbol	Name	Function Class
Ap1ar	adaptor-related protein complex 1 associated regulatory protein	Intron
Gm43654	predicted gene 43654	within coordinates
Rr584871	regulatory region 584871	141 bp distal
Rr584872	regulatory region 584872	107 bp proximal