rs48189103 SNP Detail

Summary

• ID
  rs48189103
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148173347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GCTTATAAAG TAAGACCGTG TTTATGTCTT ATTGATCTAC
  TTAGTGGGGT GGGTGGATGC ATGCCACAAC ATGAGTGGGG AGGCGAGAGT GTGGATGGTT
  Y
  TCCTTCCATC CTGGGTTCTG AAGCCAGGGT AAGGAAAGGG AGACAGGACC TGAAGTCAAG
  AAAGGGGCTT TCCAGCTGAT GGCTGAATAG CCCCCACCAC A                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss147991998	ENSMUSSNP5067732	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs48189103					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148173347 () rs orientation: forward

Symbol	Name	Function Class
Agtrap	angiotensin II, type I receptor-associated protein	859 bp upstream
Cpgi15288	CpG island 15288	339 bp distal
Rr377390	regulatory region 377390	within coordinates
Rr604583	regulatory region 604583	870 bp distal
Rr604584	regulatory region 604584	369 bp distal
Tssr44579	transcription start site region 44579	863 bp upstream
Tssr44580	transcription start site region 44580	834 bp upstream
Tssr44581	transcription start site region 44581	821 bp upstream
Tssr44582	transcription start site region 44582	291 bp downstream
Tssr44583	transcription start site region 44583	319 bp downstream