rs48187593 SNP Detail

Summary

• ID
  rs48187593
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148644595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGAAAGAGG AAGAAAGGAA GAAAGAAAAG ATTTTCCTGA
  GGGTCACATA CCTCAGCGGT TGGGAAGTAA TGAGAATGGT TGGGTTTCTG GGTCTGAATT
  Y
  CGGTACCAAC CAACCACAAA AAAACAAAAC AAACAAAAAA AAAAAGCACT GCTAAAGGCC
  AGTGAACATA GGATAATCGC ATGGCCTCTG GTTGTTAAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148011402	ENSMUSSNP3133156	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
ss321421192	CHEV_4_147934247	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48187593					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148644595 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15305	CpG island 15305			1195 bp distal
Exosc10	exosome component 10			Intron
				Noncoding-Transcript-Variant
Rr398859	regulatory region 398859			1615 bp downstream
Rr604703	regulatory region 604703			1666 bp distal
Tssr40280	transcription start site region 40280			1669 bp downstream
Tssr40281	transcription start site region 40281			1638 bp downstream
Tssr40282	transcription start site region 40282			1392 bp downstream