rs48186230 SNP Detail

Summary

• ID
  rs48186230
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102379828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGTTGCT CAGAGCAGAA
  AAGGGGAAAG AAAGCGCTTG GAGGTAGAGC AGTGTTGAGA GGGGAGTGCA GGTGGGTTTA
  CTCTATCCTC CCATCGCCTG TTGGGGGAGG GCATACTCGG CCTTATATGG AGGTGGGTGG
  CAATTTTTAG GAGTATCTCC TTCTATGGAT TTCAGGAAAT AAACTCTGGT CCTAGTGCTT
  S
  AACAGTAAAC AGCTCTGTCA TTCTGTTGGG CCCCAGGCCA CTCTTCTAAT CTGTCTCTGT
  CTGCCTAATT TAGGTGACCA CAACCAATAC CTGCCCCAGC CCCCCATTCC AGCCTTCCAT
  GCCACCTTTC TCAGCCTCTT CCATAAGCCT CTCATCTCAG GTTCTAGTAC CATCCTGCCC
  TCTCAGCCTC CCATCCCAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147115254	ENSMUSSNP2803961	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48186230					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102379828 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11977	CpG island 11977	283 bp proximal
Pamr1	peptidase domain containing associated with muscle regeneration 1	529 bp upstream
Rr561703	regulatory region 561703	148 bp proximal
Rr561704	regulatory region 561704	1420 bp proximal
Tssr19094	transcription start site region 19094	562 bp upstream
Tssr19095	transcription start site region 19095	616 bp upstream
Tssr19096	transcription start site region 19096	634 bp upstream
Tssr19097	transcription start site region 19097	655 bp upstream