rs48185259 SNP Detail

Summary

• ID
  rs48185259
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83995598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATAGGCTC TTTTTGGTGG
  TGTGTTAAGA TTTGAAAGCA TGACTGAATA GTTCAGGAGA GTAGAGGAGG AAATGGAAAT
  AGAGTTTGGA GGCTCTTTCA AAAGGTAATG CAAAAAGAGC GTGTGGTTGG CGTTTAGGCT
  GAGTGGTGTG GTTCCCACAT GTGTGTGCTG TCAAGAGAGA GGGAGACTGG GCAACTTGAG
  R
  ATCGCTGTCT GACCGCTAAG CATCCACATA AGCAGAGTTG GTTGTCTGCC CTGCCAAGTC
  ATACAGGGAG CAGGTGTGGA GGGCACGAGC AGGATATCCC CTCTGAAAGT GTTGTGTCCC
  TCAAAATGAA AAGGGCCGGG ACCATGCCCC CGCCCCACCC CCATTTACCT GCTGGAGTGT
  GTGGGGGTGG AGGTGGGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60905568	NES15954299	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48185259					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60905568	NES15954299	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83995598 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17623	CpG island 17623	329 bp proximal
Dysf	dysferlin	Intron
Rr632975	regulatory region 632975	894 bp distal
Rr632976	regulatory region 632976	1007 bp distal
Rr632977	regulatory region 632977	305 bp proximal
Rr632978	regulatory region 632978	417 bp proximal
Rr632979	regulatory region 632979	1353 bp proximal
Tssr1912	transcription start site region 1912	778 bp upstream
Tssr57398	transcription start site region 57398	730 bp upstream
Tssr57399	transcription start site region 57399	748 bp upstream