rs48185204 SNP Detail

Summary

• ID
  rs48185204
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:71699111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCT TAATAACGAA TAGAGTTATT
  Y
  ATAACATGTA TAACACCACC AATCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146751477	ENSMUSSNP7146138	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss320340945	CHEV_2_71706824	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48185204					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:71699111 () rs orientation: forward

Symbol	Name	Function Class
Gm74965	predicted gene, 74965	1215 bp upstream
Gm75575	predicted gene, 75575	within coordinates
Rr370575	regulatory region 370575	within coordinates
Rr558853	regulatory region 558853	1226 bp distal
Rr558854	regulatory region 558854	800 bp distal
Tssr18293	transcription start site region 18293	1008 bp downstream
Tssr18294	transcription start site region 18294	254 bp downstream
Tssr18295	transcription start site region 18295	241 bp downstream
Tssr24499	transcription start site region 24499	1183 bp upstream
Tssr24500	transcription start site region 24500	441 bp upstream