rs48181121 SNP Detail

Summary

• ID
  rs48181121
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8104317 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCACAAG AATCAATCAG
  AAGTGATATT AGGTTAATAA ATTTATTAGA GCCAAGGGTA AAAGAAAAGA ATGTTTCCTA
  AGAAGCAGGG AAATATAACT ATATTCCTCT GTATAGCCAT AGATGATGGT TAGCTTTATT
  GTAGAATCGC CTGGGAAAGA GTCTCAAAAA ACTGTCTATA TTGTATTGGT CTATGGACAT
  R
  TTTGTGGGGG TTGTCTTAAG TCAGTTAGTC AACGTGGAAA AACACAGCCC ACTCTGGGTG
  GCACCATTCC TTGGAAGGGA CCCTAAACTG TACACGAGTG AATAAATAGA ACAGAACATA
  CAGGTAAGCA ACTGAGCATG CATGCAATCA TCCTCTCTTT GTCCTTGACT GTGGATGTGA
  TGTGACCAGC TCCCTCAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss132961615	ENSMUSSNP62156	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs48181121					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8104317 () rs orientation: forward

Symbol	Name	Function Class
Col28a1	collagen, type XXVIII, alpha 1	Intron
D6Mit348	DNA segment, Chr 6, Massachusetts Institute of Technology 348	790 bp proximal
Rr626348	regulatory region 626348	611 bp proximal
Rr626349	regulatory region 626349	1489 bp proximal