rs48179956 SNP Detail

Summary

• ID
  rs48179956
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:133962930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACATATAAA TAAGGAAATA TTTTTCTTCT TTTATAGCAC
  ATCGGGAGAA ATGGCTCAGA GATTAAGGGC ACTTCCTGCT TTCCAGGAGG ACCGGAGTTC
  R
  CTTCCCAGCC CCCATATCAG GGGTTTCACA ACTGTGTTAG CTCTAGCTCC ATGAGATCTG
  CCCCCCTTCT TCTGGCCTCT CAGGGCATCT GTACAGGCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133768831	ENSMUSSNP4678126	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss321975822	CHEV_6_133935985	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48179956					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:133962930 () rs orientation: forward

Symbol	Name	Function Class
Rr380154	regulatory region 380154	673 bp upstream
Rr639549	regulatory region 639549	611 bp distal