rs48179640 SNP Detail

Summary

• ID
  rs48179640
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108448583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCTTCGAG GTTGTAGTTG TCACGGAGGG AAGGCCTGGC
  GGCAGGGATG TGAAGCAACT GATCACACTG CATCCCCAGT CTGCAAGCAG AGTGGATTCT
  Y
  GGCTCCTTCT CATTCAAGTC TCAGCACCAG CTGAGGAAAT GGTGCCACTC ACATTCGGGG
  TTATTCTTCA TACATCAGTT AACCTCATCA AGAAACTCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133503047	ENSMUSSNP6904771	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48179640					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108448583 () rs orientation: forward

Symbol	Name	Function Class
Gm35165	predicted gene, 35165	within coordinates
Gm44101	predicted gene, 44101	within coordinates
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636115	regulatory region 636115	488 bp proximal
Rr636116	regulatory region 636116	910 bp proximal
Rr636117	regulatory region 636117	1193 bp proximal
Tssr58061	transcription start site region 58061	1411 bp upstream
Tssr58062	transcription start site region 58062	1445 bp upstream
Tssr58063	transcription start site region 58063	1462 bp upstream
Tssr58064	transcription start site region 58064	1493 bp upstream
Tssr62385	transcription start site region 62385	27 bp downstream
Tssr62386	transcription start site region 62386	914 bp downstream