rs48178261 SNP Detail

Summary

• ID
  rs48178261
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166182677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTACCTG GGGGTGGGGA
  GGAGGGGAGA CTATGCAGAT GTGTTACGAG GACTACACAT TGTTCACAGG TATGAAATTG
  TCAAGAGATA TTCTACTGAA AAAAACAAAG AAGTGTACTG GCTTTGTCTT TCAAGTCTGA
  CTTTAATACT ATCTATAATC TTTAACAGTA CTTTTTAATT GCAACATTCT AAAAATGTGT
  S
  TAAGTATTTA GCTAAAATTA CTTCTTTGGG GAATTAAATT GTTTGAATAT GAAAAAAAAC
  CTGGAAGCTT TATATGAAGC AGCTATTCCA CTTCTGGGTT ATTTAAAAAA AAAAAAAACC
  TGAAATCTGG GTCACAAAAA GTTTTAACAC ACCCTCATTC ATTAAACAGC CCAAATGTCC
  ACTGATGGAT ACACATGTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148251273	ENSMUSSNP6513201	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48178261					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166182677 () rs orientation: forward

Symbol	Name	Function Class
Rr570219	regulatory region 570219	1545 bp distal
Rr570220	regulatory region 570220	1112 bp distal
Rr570221	regulatory region 570221	1562 bp proximal