rs48177881 SNP Detail

Summary

• ID
  rs48177881
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27158086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTCCATT TTCCCAGATC
  TCACAACATC TAAAGTACCA GACAGCCCTT CTCCAAATAA TTACAAATAT TACTTTGGAC
  TTTCAAAGGG GAAGTCTACC CATTATTCCT ATGAAGGGTT TCCCCTTTAA ATCCATAAAT
  CTAGACTGAA AAAGATCAAT GACCTCATTC TTCAGGCACT GAGAAGCCAC AAGTTAGCAT
  K
  ACCAGGCCTG TAACTGCAGA ACTGTGAATA CCATCTTTTA AAGTACAAGG AGAAAGCCTG
  ATAAAACTCA GAACTGACTG AAATGCCAAA CTACAAGCAA ATTATTAAAC AATATGTCCT
  ACAATTACAA TGGCTATTTA TTTTAAAAGG CTATTTAAAA TAAAACAAAA GTTAACTATG
  TATGCCTATT TTGCTCTCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60380606	NES15885468	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48177881					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60380606	NES15885468	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27158086 () rs orientation: forward

Symbol	Name	Function Class
Ect2	ect2 oncogene	Intron
Rr574344	regulatory region 574344	581 bp distal