rs48177483 SNP Detail

Summary

• ID
  rs48177483
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:169200272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTATTTT ATTGCTTTAA
  ATGTGTGTCT TTTTCTATAT GTGTCTGTGT GCCACACATA TGCCTGGTAC CTGCAGAGTT
  CAGAAAAGGG CATCAGATCC CCTGAAACTG GAGTTATGAA TGGCTGTAAG CCACAAAGTG
  GAGACTGGCT TGCATGCACT ATGTATTCCA AGCTAGTCTT GGAAGATCAC GGTGATCTTC
  Y
  TGCTTGAAGC TCCTGAATTC TGGGATTACA CGTGTTACCA ATATTCCCAG AAATCTCATT
  GTCTTATTGA TTTCAGTCCC CTCTGCCCCT CGGGTACTTC AAAACCAAAG TTAGGTCAAC
  CCCACCATGC TATTTCAAAA GTGTCGGCAT GCCAGATGTT AAAGTTTGGA GAAAGAGAAG
  GGGTTTGGAG AGGAGTCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148282821	ENSMUSSNP2230521	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss320612339	CHEV_2_169183852	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48177483					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169200272 () rs orientation: forward

Symbol	Name	Function Class
Gm75475	predicted gene, 75475	within coordinates
Rr571188	regulatory region 571188	560 bp distal
Rr571189	regulatory region 571189	1962 bp proximal