rs48175590 SNP Detail

Summary

• ID
  rs48175590
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104961657 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACAGTAGC ACTAGGAAGG
  TTGAGAACCA CTGCCCTAGG CAAACAGCCC TCGAGACAGG TACAGTTTAC AGTCTGGGTA
  AAGAGATACC CAGCCCAAGT AATCACGGTT TAGAGGAAGT CAAACAGTAT TTCTTGTCCA
  CACAGCGCTT CGTTCATCCA TATACTATCT GTGTCAGTGC TGTGTGGGAA GACTGTCTTA
  M
  CCTGCAATGT GGATAGCACT GTAAGAAATT AAGATGAGAA GACGAAGTCA AAGAAACCAA
  GAGAACCGGA GGAAGGCTAT AGAGTTAAGA ACTGGAAAAG AAAAATGACA AGAATAACAC
  CAAATCTGTG CCACAGTCTG CTAACCAGCC ACCAGTTTCC ACCGGGGGTG GGGGGGGGTG
  GGGGGTGGGG GTGGGGGTGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C3H/HeJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60431120	NES15934361	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	C3H/HeJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs48175590					SNP	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60431120	NES15934361	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104961657 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13657	CpG island 13657	1098 bp distal
Cttnbp2nl	CTTNBP2 N-terminal like	1195 bp upstream
Rr367520	regulatory region 367520	1191 bp downstream
Rr582659	regulatory region 582659	1401 bp distal
Rr582660	regulatory region 582660	705 bp distal
Rr582661	regulatory region 582661	199 bp proximal
Tssr34913	transcription start site region 34913	1767 bp upstream
Tssr34914	transcription start site region 34914	1624 bp upstream
Tssr34915	transcription start site region 34915	1403 bp upstream
Tssr34916	transcription start site region 34916	1354 bp upstream
Tssr34917	transcription start site region 34917	1190 bp upstream
Tssr34918	transcription start site region 34918	535 bp downstream