rs48173586 SNP Detail

Summary

• ID
  rs48173586
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:133456906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATCTGGC AGAAGAAAAG
  TAAAAGAAAG AAAGAAAGAA AGAAAGAAAG AAAGAAAGAA AGAAAGGAAG GAAGAAAGAA
  AGGAAAGAAG GAAGAAAGAG AAAACTCTAA AAATATATTT ACATAGCCAG ACACAGAATT
  GCTTAGCTAG GCATCTTGCT ATTAATTAGT ATGTTGTAAA TTTTGCTGCC TTGGCTGATA
  M
  TAAGACATGG TATTTAGAGG AATCATTAAT GAAGACAAAA GAAAAACATC TGGAGTAGCC
  TAGCTCCACT ATAGACCCTA GGCTGAACTA ACATTATATT GCATTTCTCT TTCCCCATTT
  GCCTGCCAAA TCCCTGAATT AATCTACTCC TCCCCCCCCC CCCCCCGTTT CGGCAGTATT
  ACATCACAAG CATTTGACAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135918910	ENSMUSSNP4208163	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48173586					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133456906 () rs orientation: forward

Symbol	Name	Function Class
Gm64379	predicted gene, 64379	1591 bp upstream
Rr398038	regulatory region 398038	1688 bp downstream
Rr585594	regulatory region 585594	1618 bp distal
Rr585595	regulatory region 585595	1517 bp distal
Rr585596	regulatory region 585596	within coordinates
Rr585597	regulatory region 585597	1979 bp proximal
Tssr35771	transcription start site region 35771	1604 bp upstream