rs48173080 SNP Detail

Summary

• ID
  rs48173080
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:154150818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTA CCCTCCATCC AGCTGGCACC
  R
  CTCTCCCGAG GCTCTGCACA CAGGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148097630	ENSMUSSNP5408947	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321438312	CHEV_4_153440470	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48173080					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154150818 () rs orientation: forward

Symbol	Name	Function Class
Rr606065	regulatory region 606065	641 bp distal
Rr606066	regulatory region 606066	772 bp distal
Trp73	transformation related protein 73	Intron