rs48171806 SNP Detail

Summary

• ID
  rs48171806
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72859605 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCACAATG AGAACATAGC
  TAGGCATGGT GGATAGTTTG AGGCTAGTCT GTGCTACCAA ACAAGACTGT CTCAGCAAGG
  TGTGGCTGGG AGCTGGAGAG CTGGTAAAAT AGGACCCAGG CTCGGATCCT AGTACCTATA
  TGGTAGCTCA CAATCAACCC TAATTCCAAT TCCAAGGACT GTGATATACC TCTTCCTGGG
  T
  TTCATGGGCA CCAGGGATAT ATGTGGTACA GGTAAATATA ATCGTGCTAA CTACTCATCA
  ATGAAAAAAA AAAAGAGAAA AGAAGGACAG GGCTGCCCCT AATGGTAGTC GTTTATTTTA
  GGTATAATGG AGATATGAAG GAGAGCAAGC CAGACGCAGA GGCATCTGAA GAGTCCAGAA
  TAAACAGGAC CTCCGCCTGG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133287841	ENSMUSSNP2225933	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48171806					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72859605 () rs orientation: forward

Symbol	Name	Function Class
6030456E01Rik	RIKEN cDNA 6030456E01 gene	983 bp downstream
Kcmf1	potassium channel modulatory factor 1	Intron
Rr632324	regulatory region 632324	1059 bp distal
Rr632325	regulatory region 632325	118 bp proximal