rs48168886 SNP Detail

Summary

• ID
  rs48168886
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138670260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AAACCAGTTC TTCGCCTGAT TTGCCTGGGA CTATAAGAAC
  CTAGCAAGCA GCTTGGGTCC CGAGCTCTTC TCTACCCCCA GCCCTGGGAA GGGTGAACCT
  Y
  GCCTGAAAGC TTGCCAATAA AGCTGAGCTT GTTTTAAGCT GCCAGCTCCG TGTGATCTGC
  ATCCCTTGGC TTCTCACCCA GCACTTGGGT TGTGGAAGCA G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147660976	ENSMUSSNP1804761	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48168886					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138670260 () rs orientation: forward

Symbol	Name	Function Class
Rr398631	regulatory region 398631	799 bp upstream
Rr603051	regulatory region 603051	1129 bp distal
Rr603052	regulatory region 603052	561 bp distal
Rr603053	regulatory region 603053	628 bp proximal
Rr603054	regulatory region 603054	959 bp proximal