rs48166209 SNP Detail

Summary

• ID
  rs48166209
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:49448378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTGA GTAGACTTAT TTTAGGAAAA
  K
  CCTATAAAAA AATTCTCAGA GAAGT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss135136708	ENSMUSSNP3693025	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G		T
ss320750064	CHEV_3_49297851	CHEVERUD	SCREENING_POP	f	SNP				G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs48166209					SNP	T	G	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:49448378 () rs orientation: forward

Symbol	Name	Function Class
Rr576096	regulatory region 576096	945 bp proximal