rs48164955 SNP Detail

Summary

• ID
  rs48164955
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:5153264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCAATGGA ACCCTGCTTT
  ATAGGGTAAT TAAGACAGTA GACATGGTTA TTAAGTACAT CATGCTAAAC TAAACTGGAA
  TGCTGTGAAA TATAATCCAA AATCATAAAT AAATCGTGAA TATTCCAACA CAGGGAAATG
  TGTGAAAGGC AGAATGTGGC CCTCTGCAAA CTGCATGAAA GAGCTCTTAC CCAAGCAGAC
  S
  TGCTAAAGTC TACCCAAGGA AAGCCTCCAA AGACTCGTGA AATATGTGCA GTGGATTCTC
  CATGTATGCT GGTAGTTCTT TCCTCTCCCA TTTAACATTA CATTTAACAT TACGTAAATC
  AAGATGACTA TAGTAATCTT CTGTTTATCT TGTGGCAACA ATCAAAATGT GAAAATACGT
  ATAATGTTAA GTTTGATATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60366983	NES15869419	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48164955					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60366983	NES15869419	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5153264 () rs orientation: forward

Symbol	Name	Function Class
D3Mit61	DNA segment, Chr 3, Massachusetts Institute of Technology 61	149 bp proximal
Rr573165	regulatory region 573165	607 bp proximal
Rr573166	regulatory region 573166	1498 bp proximal
Rr573167	regulatory region 573167	1757 bp proximal