rs48164640 SNP Detail

Summary

• ID
  rs48164640
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:44074344 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCCATCAG ACTTTTACAG
  CTTGTGGTCT ATCTCAGTCA AGGATGAAGC TCTGGTTTGC ATGGTATTAG TGTAGCCATG
  TTGGATCCTG CAAGGGTCAT CCCATCATGA AAGGACAGAC AATGAGTGGT TTTGTACACT
  GAGGTGACAT TGTCTACCTT TCTGTCTGAG ATCAGCAACC ATCGATTTGT AAGTTGACCA
  R
  GTCACCATTC ATGAATGCTC TGATAACACG TCAATTTCCA ACACATTTCA CATCATACTT
  TTTTTTTCTA AATACCATCT GAGCTGTTGG GTAGAGAATG GATTTGAATG GATTTGTTGA
  GAGTCAAGAG TTGGTTCCAG TGAAAATTCC ACTGAAATAG ATATGCAATT CATCTGGATG
  TAAAACTCAT GAGACTTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146246418	ENSMUSSNP4981327	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss321100055	CHEV_4_44087216	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48164640					SNP	G	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:44074344 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14207	CpG island 14207	1277 bp distal
Gne	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	Intron
Rr591149	regulatory region 591149	1577 bp distal
Rr591150	regulatory region 591150	1080 bp distal
Rr591151	regulatory region 591151	1347 bp distal
Rr591152	regulatory region 591152	158 bp distal
Tssr41482	transcription start site region 41482	1787 bp upstream
Tssr41483	transcription start site region 41483	1651 bp upstream
Tssr41484	transcription start site region 41484	1613 bp upstream
Tssr41485	transcription start site region 41485	1323 bp upstream