rs48158954 SNP Detail

Summary

• ID
  rs48158954
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:145192949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGATCAGA ACCTGAACAA
  AATTGGGAAA GATGAAATGC TTCAAATGAT TCGACGTGGT GCCACACATG TGTTTGCTTC
  AAAAGAAAGT GAAATCACTG ATGAGGATAT TGATGGTATT TTAGAAAGAG GTGCAAAGAA
  GACTGCAGAA ATGAATGAAA AGCTGTCCAA GATGGGTGAA AGTTCACTTA GAAACTTTAT
  R
  ATGGATACAG AGTCCAGTGT TTATTACTTT GAAGGAGAAG ACTATAGAGA AAAACAAAAG
  ATTGCATTCA CAGAGTGGAT TGAACCACCA AAAAGAGAAA GAAAAGCCAA CTATGCTGTT
  GATGCATATT TCAGGGAAGC TCTCCGTGTT AGCCTAAAGC ACCCAAGGCA CCTCGACCTC
  CAAAACAACC AAATGTTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147859653	ENSMUSSNP1547705	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48158954					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:145192949 () rs orientation: forward

Symbol	Name	Function Class
Gm65281	predicted gene, 65281	892 bp downstream
Gm70672	predicted gene, 70672	460 bp upstream
Rr377358	regulatory region 377358	1592 bp downstream
Rr604378	regulatory region 604378	1978 bp distal
Smarca5-ps	SNF2 related chromatin remodeling ATPase 5, pseudogene	within coordinates