rs48157335 SNP Detail

Summary

• ID
  rs48157335
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:67422259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGGA GCCATAGAGT CTAAGCCATG
  R
  GTAGACTGGG TACACAGTGC GCATG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135258393	ENSMUSSNP5437391	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48157335					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:67422259 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13247	CpG island 13247	within coordinates
Gm40067	predicted gene, 40067	323 bp upstream
Rarres1	retinoic acid receptor responder (tazarotene induced) 1	Intron
Rr577934	regulatory region 577934	1677 bp distal
Rr577935	regulatory region 577935	1902 bp distal
Rr577936	regulatory region 577936	587 bp proximal
Rr577937	regulatory region 577937	626 bp proximal
Rr577938	regulatory region 577938	724 bp proximal
Tssr33502	transcription start site region 33502	542 bp downstream
Tssr33503	transcription start site region 33503	561 bp downstream
Tssr33504	transcription start site region 33504	700 bp downstream
Tssr33505	transcription start site region 33505	737 bp downstream
Tssr33506	transcription start site region 33506	778 bp downstream