rs48156370 SNP Detail

Summary

• ID
  rs48156370
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163552509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTGTATT TCTTAACTGC
  TGGAGACAGG TATCCTAGGA GAGCCAGGTG GATGCTGTAT GAGGTCCCCT AACTTCATCC
  TAGAGTCAGA CACCATCCTT CATTTTACGT TAGACATCAG ATACTAGGGT ATGGCTCAGT
  GATAAATGGG AGGCCCTAAG CTGAATCCCC AGCACCTCCC AAAAATGAAA GAGGAGGAAA
  Y
  GGAAGAAAAG GAAGAAAAGA AGTTCTAAAG CCAGCTCACA ACGCATCCAA AAGGATTTAA
  ATTAAGCCTC ACATCCCCTT CTGTATTTTC TTGATGGTAC TGAAACTTCA GCCCAGGACT
  GTGTTATGCT AGGCCAGTGG TTTGTCACCC AGTTACACTC CCAGCTTTTT AGATGTCAGT
  GTGTTAGGCA GAGTGCCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148209642	ENSMUSSNP1634829	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48156370					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163552509 () rs orientation: forward

Symbol	Name	Function Class
Pkig	protein kinase inhibitor, gamma	Intron
Rr569473	regulatory region 569473	191 bp proximal
Rr569474	regulatory region 569474	1788 bp proximal