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rs48152839 SNP Detail
Summary
  • ID
    rs48152839
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr4:148466520 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          TAGCG CAATAGTGGC ATGGCTGTTA
    Y
    GGTGTAACCA ACCACTTTTT GCTTG                                      
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
LG/J
SM/J
ss148004858 ENSMUSSNP4668832 ENSEMBL ENSEMBL_Sanger f SNP T
ss321419870 CHEV_4_147756172 CHEVERUD SCREENING_POP f SNP C T
SNP Consensus Information
SNP Consensus Type
A/J
LG/J
SM/J
rs48152839 SNP T C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:148466520 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr604668 regulatory region 604668 1283 bp distal
Rr604669 regulatory region 604669 1835 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory