rs48152716 SNP Detail

Summary

• ID
  rs48152716
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145098009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCGGAAAGT ATTGAAACTA
  AATGTCACCC ACGGCTGATC TGAAATTCAA ATGTAACTGT GCATCCGGTG TTTTACCTGG
  CAAGCTCACC TGCCACCCAC CGCCGCCCCT CTGGGCGGTC GGGTTTCACT TCCTTTCCAC
  GGCTGTGAAG TTTGCCTCTG TAGTACATGG CCCACATGTG CTTCACATCA AACCCTGTTC
  R
  GAGTCCTGAG CAGCCTTGTG CCATCAATTA TAACCTCTTA CCGTTTCTCT TGACTCAAAA
  TTTCCCCCTC TTTCTGTTTT TGAAACCGGT TTCACTGCCA ATGTTGTAGC TTAGGCCCTC
  TTCTTTTTTT TTATCCGGGA TTTGTGTATG AGACCTCCAG TTACTCGCCC TGCCTCCAGT
  CTGGCATTCC TTCAACCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61094045	NES16614209	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48152716					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61094045	NES16614209	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145098009 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
Gm35133	predicted gene, 35133			278 bp upstream
Rr586774	regulatory region 586774			within coordinates
Rr586775	regulatory region 586775			178 bp proximal
Rr586776	regulatory region 586776			1950 bp proximal