rs48151201 SNP Detail

Summary

• ID
  rs48151201
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:86713298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GTTGCATGCT CTGAGATTTG ACACCAGTGA GCCCACCCAT
  CCTTACTTTG ACCTTGGACA CCAGTGAGCC CGCCCATCCT TACTTTGACC TTGGACACCA
  S
  TGAGCCCACC CATCCTTACT TTGACCTTGG ACACCAGTGA GCCCGCCCAT CCTTACTTTG
  ACCTTAGACA CCATTGAGCC CGCCCATCCT TACTTTGACC T                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135449068	ENSMUSSNP1507914	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48151201					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:86713298 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dclk2	doublecortin-like kinase 2			Intron
				Noncoding-Transcript-Variant
Rr579387	regulatory region 579387			1788 bp proximal