rs48150206 SNP Detail

Summary

• ID
  rs48150206
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145098488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCTCTGC AGTGCATCTC
  TCTGAAGACA TGCACGTCTT TATTTTTAAC ACATGGTCCT CTGCGCTCCA ACCATCTCCT
  GACTCCTCAG CACACACTCG TGCTCACCAT TACCTTTTCA AGGTTCCGCT CTAGCCAGAC
  TTCATAAATT AACAAACCAC CCTGTGCCGG TTCAGACCTC CCAGCTCCTT GGTTGCAGTT
  Y
  TTTTATCAGG ATGTAACCTT CTTTCCTGCA CTTTCTCGTC AGCCAGCCAG TGTCTGGGCA
  TCACACACAA CACTGTCCAA GTTTCCTTAG CATCTAATTT ATTTTCCCCC ATGTCCCTGA
  AAAACCCCTA TTAAACAATT ACCTCCATAT ATTATATCTG TTTTTATGCA TATCTGCCTC
  TCTGCTAGAC CACAAGGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61094043	NES16614211	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48150206					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61094043	NES16614211	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145098488 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
Gm35133	predicted gene, 35133			757 bp upstream
Rr586774	regulatory region 586774			302 bp distal
Rr586775	regulatory region 586775			98 bp distal
Rr586776	regulatory region 586776			1471 bp proximal