rs48147842 SNP Detail

Summary

• ID
  rs48147842
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:117654480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTTGTTCC ATTTACAAGC
  CCTGAGCACT GCACGCAGCA CAAGCCCACA ATTCTGTCCC TGCGGAGTCT CTCCTGGTCT
  CTAGTGGGTT CTCGCCTTGG TCTCCATTCT CTGTAAGCCT CTGTAACTTT CCTTCCCTGA
  GGGAGGCCTT GGGCTCTGTG CTTTAACAGC CGCCTGCTAA TTCCTGCCAA CTGTTTGCCC
  R
  TGCTGCCTTC TCCACCTGGT CCCTCCTTGA TGTTCCTGCA CAGTTTTATT GGGGGTAACC
  ATGGTTTTCG ATTTAAATAT TTTTTGTCAC ATATGATGTC TTTCATAGAC TTACACTGCT
  CTGACACTAT CCTGAGATTC CAAATCTGGA TTTTCAAATG ATTTGTCCTT TGTCTTGGAA
  TTGGTCCGTT TCCTGAAGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60933662	NES16203038	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G		G	G	G	G		A
ss321922999	CHEV_6_117627537	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48147842					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60933662	NES16203038	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117654480 () rs orientation: forward

Symbol	Name	Function Class
1700030F04Rik	RIKEN cDNA 1700030F04 gene	1688 bp downstream
Rr637348	regulatory region 637348	1790 bp distal
Rr637349	regulatory region 637349	1907 bp distal
Rr637350	regulatory region 637350	1868 bp distal
Rr637351	regulatory region 637351	672 bp distal
Rr637352	regulatory region 637352	55 bp distal
Rr637353	regulatory region 637353	792 bp proximal