rs48147515 SNP Detail

Summary

• ID
  rs48147515
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172342522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAC TGATTTTCAA GCACGATCTT
  R
  TCTTCATACC CCTATCCCAA TCCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120011705	PARCsnp_1.19931	PARC_SEQ	INBRED	f	SNP		G	A
ss120014610	PARCsnp_1.09979	PARC_SEQ	INBRED	f	SNP		G	A
ss146194072	ENSMUSSNP5968689	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320125813	CHEV_1_174445086	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs48147515					SNP	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172342522 () rs orientation: forward

Symbol	Name	Function Class
Gm37125	predicted gene, 37125	108 bp downstream
Gm57108	predicted gene, 57108	941 bp upstream
Gm70635	predicted gene, 70635	within coordinates
Rr396590	regulatory region 396590	1718 bp downstream
Rr396591	regulatory region 396591	621 bp downstream
Rr423601	regulatory region 423601	1753 bp distal
Rr423602	regulatory region 423602	1920 bp distal
Rr423603	regulatory region 423603	952 bp distal
Rr423604	regulatory region 423604	817 bp distal
Rr423605	regulatory region 423605	281 bp distal
Rr423606	regulatory region 423606	within coordinates
Tssr302	transcription start site region 302	943 bp upstream
Tssr10235	transcription start site region 10235	1698 bp downstream
Tssr10236	transcription start site region 10236	808 bp downstream
Tssr15228	transcription start site region 15228	975 bp upstream