rs48144549 SNP Detail

Summary

• ID
  rs48144549
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163552778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACATCCCC TTCTGTATTT
  TCTTGATGGT ACTGAAACTT CAGCCCAGGA CTGTGTTATG CTAGGCCAGT GGTTTGTCAC
  CCAGTTACAC TCCCAGCTTT TTAGATGTCA GTGTGTTAGG CAGAGTGCCA AACAACTTGT
  AGATACGTTG CAGAATTACT ACAGAGATAG GTGGCTGCTT TCCCTTTTGT TTGCACATGG
  R
  ACCCCTAAGG TTGGGGAACT GTCCCCAGAG GCACCCACCT GATACCAACA GAGCTAGAGC
  TTAGCCCAGC CTGGGACCTT GGCAAGCCTG CCTGGAAGTG ATTTCACTTT CCCTTCCTGC
  CCCTCCCTCC ATAGGAGAGG GAGGCTGCCC CTTTCTGGAA GTTCTGCTTC GAAGCTGAGC
  CCCCAACTAA GCTTAGAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148209669	ENSMUSSNP5835150	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48144549					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163552778 () rs orientation: forward

Symbol	Name	Function Class
Pkig	protein kinase inhibitor, gamma	Intron
Rr569473	regulatory region 569473	within coordinates
Rr569474	regulatory region 569474	1519 bp proximal