rs48143334 SNP Detail

Summary

• ID
  rs48143334
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102378097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTCAAGA CAGGGTTTCT
  CGGAGCAGTC TTGGATGTCC TAGAACTTGC TCTGTAGATC AGGATGACTT CAACTCAAGA
  GATCTGCCTG CCTCCTGAGT GCTGAGATCA AAGTTGTGTG CCACCACCAA CTGGCTTCAA
  TGCCATTCTT GATGCTTGCT TATACAAATG TCTCCTGGTT GGAGAAGTTG ACAATGAGGG
  W
  GAAAGCTCAT ACTGAGTTTT CTAAAGGTCA GTCTCAGGAC AGACAATGAT GATGCCTAAT
  ATTTATTTAC AGCAGCCGTG TGTGCTAGGC GTGCGGTATC TTTGCATGAA TAATCTCATT
  CCATCTTTCC AAGAGTTTCT AAAACAGGTT TGATCATTTT GCCTACTGTA TACTGAAGAC
  AAGCTGAAAG AATTGAGTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147115127	ENSMUSSNP1723527	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320438706	CHEV_2_102387909	CHEVERUD	SCREENING_POP	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48143334					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102378097 () rs orientation: forward

Symbol	Name	Function Class
Rr561703	regulatory region 561703	1879 bp proximal