rs48140420 SNP Detail

Summary

• ID
  rs48140420
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:41359500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTTTT TAAACCCTAA
  ATGTGCTTCT AACTGTGACA AGCTTATCCC CTCTCCTTTA AGGGCTGATC AGAATGGAAT
  ATATTTAAAA AAAAAACAGA ATTACCATTC TGAAATTACC AGCGGTAATT CTGTATGTAA
  AAAGACAAGG GAATTTGAAT GTCAAATGTT CAGATTTTTC CGTAGCTACT TATTTACTAT
  R
  ACGCAGCTCA TAGCTCAGGT CTCCAGAAAC CTCATATGTC TATTAACATA TCTGTCTAGT
  TAACATATCT GAAGCGGAAC ACCTCATGCA GGCCACACAT CATAGCAGAA TATTCTCACA
  AAAGAAAAGC TTTTTTTTTT TTTTTGCCTG AGCATTCCTT TTTATAAATT AGAAATAATT
  TTCAAAAGTT TGAAGCTAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60600966	NES16305577	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48140420					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60600966	NES16305577	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:41359500 () rs orientation: forward

Symbol	Name	Function Class
Slc7a2	solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	Intron
Tssr77022	transcription start site region 77022	1927 bp downstream
Tssr77023	transcription start site region 77023	843 bp downstream
Tssr77024	transcription start site region 77024	639 bp downstream
Tssr77025	transcription start site region 77025	592 bp downstream
Tssr77026	transcription start site region 77026	182 bp downstream
Tssr77027	transcription start site region 77027	144 bp upstream
Tssr77028	transcription start site region 77028	242 bp upstream
Tssr77029	transcription start site region 77029	410 bp upstream
Tssr77030	transcription start site region 77030	1437 bp upstream
Tssr77031	transcription start site region 77031	1583 bp upstream
Tssr77032	transcription start site region 77032	1942 bp upstream
Tssr81070	transcription start site region 81070	1966 bp upstream