rs48139970 SNP Detail

Summary

• ID
  rs48139970
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147604368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ccactgtgt gctctgaagt caactcttct
  atacttaata tctctgaata caatgggcct atgaatatca agttcattat tttagcattg
  gctaatatcc acacataagt gaatatattc catatttctc cacctgtgtc tggtttacct
  C
  agtagataat tttttctagg tacatctatt tgcctgaaca ttttaatgtG AAtatctatc
  tatctatcta tctatctatc tatctatcta tctatctatc tatcATCAAA ATAATGAACA
  ACTACTATAA ATTAGCGGTT GTCTCTCTAA                                 
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321414784	CHEV_4_146894020	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48139970					SNP	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss147966990	ENSMUSSNP745730	ENSEMBL	ENSEMBL_Sanger	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147604368 () rs orientation: forward

Symbol	Name	Function Class
Gm15951	predicted gene 15951	557 bp downstream
Gm69897	predicted gene, 69897	within coordinates
Rr398830	regulatory region 398830	within coordinates
Rr604494	regulatory region 604494	74 bp distal
Rr604495	regulatory region 604495	181 bp proximal
Vmn2r-ps20	vomeronasal 2, receptor, pseudogene 20	1610 bp upstream