rs48139261 SNP Detail

Summary

• ID
  rs48139261
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:59674591 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAATGAATC TATTAATATT
  TATCAGATTT TAAGCTGAGC TCTAAGCTTT TCCAATATGG TCAAGAATAC AGGCTATGAA
  TATGAATATA TGCTGATGAA AACATGAATA TATTCTTGGT GAATATATTG ATATTCATTA
  AAATTTAAAC TAGGTTTTAA AATGTCCCAA TATGGTCAAG AACATAGTTC ATGAATATGA
  R
  TATAACTTAT AAAAATGTTC ATGAATATAT TCATGTTCAT TAATTTTAAA CTGTATTAAA
  AAAGTTTTCC CAACAGGGCA AGGAAGAATG TATTCATGAA TATATTCATA AGGAGGATAT
  ATTCATGAAT ATAATCATTA TAGAGAATAT ATTCACATTT ATTGAATATG TTCACAAAGA
  ATATATTCAC AGGAATGCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss146402931	ENSMUSSNP6367559	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G		A
ss321141282	CHEV_4_59687463	CHEVERUD	SCREENING_POP	f	SNP				G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs48139261					SNP	G	G	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59674591 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
E130308A19Rik	RIKEN cDNA E130308A19 gene			Intron
				Noncoding-Transcript-Variant
Rr593108	regulatory region 593108			539 bp distal
Tssr37444	transcription start site region 37444			578 bp downstream