rs48138947 SNP Detail

Summary

• ID
  rs48138947
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:133224275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGGAGAG TGAGTGCACC
  AAGGGTATGG AGAAATTTTT CTAGGGTGTC TGAAGCTGTC CAGGTGTGGG TGGGTGGCGT
  CACATTCAAA TTTACAAACC TTTCATGGTG CCTAATGGCT TGTAAGATCA AGTTCAGATT
  TGCTCACCTA GATAAAGGAG TTTCATCATT TGCCCTCTGC TGACTTCTCC AAGTCTGAGA
  R
  CATGCTGACT TCTTGGTATA TCCTTGAAGA GGCCCTTGAC AGCACTCACT CATCCTGGAT
  AATGTTGCTC CAAGCCTTTT TTCCTTTGCC TGGTGAACAT TCACAGCATC TTCTCCATGG
  TTGTCTTGTG TCCTGTGTCA CTGTCCTTGT TTGTCCTTCA GCTTTGTCCC TTCTTTGTTC
  CTTGCTTGAG AATAAAGATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147626263	ENSMUSSNP6076053	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48138947					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:133224275 () rs orientation: forward

Symbol	Name	Function Class
Rr565593	regulatory region 565593	1035 bp distal
Rr565594	regulatory region 565594	1133 bp distal
Rr565595	regulatory region 565595	485 bp proximal