rs48138865 SNP Detail

Summary

• ID
  rs48138865
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:149221734 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGCT CCTCCAAGCC CCATCGTCTC
  Y
  CTGTAGCGCC CACACCCGAC CCTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss148028534	ENSMUSSNP2652915	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321425005	CHEV_4_148511386	CHEVERUD	SCREENING_POP	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs48138865					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:149221734 () rs orientation: forward

Symbol	Name	Function Class
Cenps	centromere protein S	Intron
Cpgi15320	CpG island 15320	within coordinates
Rr398863	regulatory region 398863	228 bp upstream
Rr604839	regulatory region 604839	within coordinates
Rr604840	regulatory region 604840	282 bp proximal
Rr604841	regulatory region 604841	336 bp proximal
Tssr44623	transcription start site region 44623	259 bp downstream
Tssr44624	transcription start site region 44624	322 bp downstream