rs48138059 SNP Detail

Summary

• ID
  rs48138059
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:135900427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGA GAGAGGGTGC TTGGGACGCC
  S
  TACGGCTTGA TTACAGCTGG TTGAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321354368	CHEV_4_135729031	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48138059					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135900427 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15100	CpG island 15100	within coordinates
E2f2	E2F transcription factor 2	Intron
Rr367754	regulatory region 367754	662 bp downstream
Rr398609	regulatory region 398609	1471 bp upstream
Rr602302	regulatory region 602302	712 bp distal
Tssr39670	transcription start site region 39670	828 bp downstream
Tssr39671	transcription start site region 39671	721 bp downstream
Tssr39672	transcription start site region 39672	689 bp downstream
Tssr39673	transcription start site region 39673	674 bp downstream
Tssr39674	transcription start site region 39674	537 bp downstream
Tssr39675	transcription start site region 39675	363 bp downstream
Tssr39676	transcription start site region 39676	256 bp downstream
Tssr39677	transcription start site region 39677	160 bp downstream
Tssr39678	transcription start site region 39678	51 bp upstream
Tssr44029	transcription start site region 44029	793 bp upstream
Tssr44030	transcription start site region 44030	512 bp upstream
Tssr44031	transcription start site region 44031	69 bp upstream