rs48137850 SNP Detail

Summary

• ID
  rs48137850
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:19801933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCCG GCAGAGCTAT CTTAAGGGCG
  W
  GCAATACTGG AGAAAGATGG ACCGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss139192928	ENSMUSSNP2821702	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
ss324564000	CHEV_14_20571087	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48137850					SNP	A	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:19801933 () rs orientation: forward

Symbol	Name	Function Class
Gm62728	predicted gene, 62728	719 bp upstream
Nid2	nidogen 2	Intron
Rr389324	regulatory region 389324	within coordinates
Rr488149	regulatory region 488149	730 bp distal
Rr488150	regulatory region 488150	1730 bp distal
Rr488151	regulatory region 488151	590 bp distal
Tssr124369	transcription start site region 124369	940 bp downstream
Tssr124370	transcription start site region 124370	911 bp downstream
Tssr124371	transcription start site region 124371	897 bp downstream
Tssr124372	transcription start site region 124372	573 bp downstream
Tssr127556	transcription start site region 127556	719 bp upstream