rs48137471 SNP Detail

Summary

• ID
  rs48137471
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116688030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCGGGCT CAGAAAACAT
  CTTTTTCTTG CTCTTAGCTA GGAATATATA TGCTTCTTAT CAGCGTTCAA AAATCCATGT
  GTATATTTGC TGTTCCGAAT GGCAGTTTTC TTGATGCTAG AGAACAATGT GTGTGATTCC
  ACAGCATAGA TGCCACGCTT CTTCATGCGA CCTCCACCTT GCCGGTCACA AGGATGCCTA
  Y
  GCTCCCCGAA GCCTTGGGTG CTGCTGTGCC GATGCACACC TGTTTTGTTC AGACAACGGA
  AAGAACTGCC AGCAAAGGAG ATGTGAATGT CTCACCCCAG AGAGAATGAC CTTCATCAAG
  GAAGCAGGTA ACGCTGCTGA GGATGTGGGG AGAGAGAAAT GCTTACGCCC TGCCAGAGGG
  AGGCTCAGCA GTAGAGCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss133578824	ENSMUSSNP4546663	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs48137471					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116688030 () rs orientation: forward

Symbol	Name	Function Class
Rr637245	regulatory region 637245	1216 bp proximal
Rr637246	regulatory region 637246	1493 bp proximal
Tmem72	transmembrane protein 72	Intron