rs48135303 SNP Detail

Summary

• ID
  rs48135303
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147605511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACATTAATA ACACAGCAAC ATTTACACAT AGGTAAATAA
  AATGTAAACA TATACATTTC TTAGTTTTTA ATCAGTGAAG AGGATGGACA TTTTGAATTA
  G
  AGTTGTTGCT GTACCACAGT GACTTCAGTT ACATCCTCAG CTGCAAAGGA TGTGGATGGT
  GAAAAGCATC TCCCACCTGT GTCTGAAAGT GTCCTGTGA                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147967080	ENSMUSSNP1156644	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321414786	CHEV_4_146895163	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48135303					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147605511 () rs orientation: forward

Symbol	Name	Function Class
Gm15951	predicted gene 15951	187 bp upstream
Gm69897	predicted gene, 69897	within coordinates
Rr398830	regulatory region 398830	1120 bp downstream
Rr398831	regulatory region 398831	862 bp upstream
Rr604494	regulatory region 604494	1217 bp distal
Rr604495	regulatory region 604495	226 bp distal
Vmn2r-ps20	vomeronasal 2, receptor, pseudogene 20	467 bp upstream