rs48134281 SNP Detail

Summary

• ID
  rs48134281
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:13153332 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCAGGCTT AGGTTTTAAA
  TGGAAAAAGC ACATGACAAC TGGCCTTAAG GTCCACTAAA GGCGCACAGG TCTTACTTGC
  AGTTCAATTA ATAAATGCTG AGAAAACACA CGGGGGAAAC TACATAGGGA GCCTCATGGA
  TCCATTAACT GAACACTTGT TGGCTATGTG GACCAGCTCA GTATGCTCTC AGATCCCCAG
  M
  TTTTCTCTTT ATATGTGAAC CTTCATTAGA GTAGTCTAGT TCCTAAGTGT TGATCACAAA
  TTTTATCTTG TTTAACTCAC ACATTGCTGA CTTGGTGTTT CTTAAGAGTA AATATTTAAA
  CTTGGCAACA AACCATACCT ACCAAATATA GTAATCACTG AAAAATACAA AACCAAATAC
  AGACATCTGT CACCGATGCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60864606	NES15985721	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	A	C	C	A	A	A		A	A		A
ss321747190	CHEV_6_13103333	CHEVERUD	SCREENING_POP	f	SNP											A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs48134281					SNP	A	A	A	C	A	C	C	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60864606	NES15985721	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13153332 () rs orientation: forward

Symbol	Name	Function Class
Rr626556	regulatory region 626556	781 bp distal
Rr626557	regulatory region 626557	867 bp distal